CRAN/E | CpGassoc

CpGassoc

Association Between Methylation and a Phenotype of Interest

Installation

About

Is designed to test for association between methylation at CpG sites across the genome and a phenotype of interest, adjusting for any relevant covariates. The package can perform standard analyses of large datasets very quickly with no need to impute the data. It can also handle mixed effects models with chip or batch entering the model as a random intercept. Also includes tools to apply quality control filters, perform permutation tests, and create QQ plots, manhattan plots, and scatterplots for individual CpG sites.

Key Metrics

Version 2.60
R ≥ 2.10
Published 2017-05-30 2517 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks CpGassoc results

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Maintainer

Maintainer

R Barfield

barfieldrichard8@gmail.com

Authors

Barfield
R.
Conneely
K.
Kilaru
V

Material

Reference manual
Package source

Vignettes

CpGassoc reference

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

CpGassoc archive

Depends

R ≥ 2.10
nlme
methods

Suggests

qvalue

Reverse Imports

pwrEWAS