CRAN/E | CpGFilter

CpGFilter

CpG Filtering Method Based on Intra-Class Correlation Coefficients

Installation

About

Filter CpGs based on Intra-class Correlation Coefficients (ICCs) when replicates are available. ICCs are calculated by fitting linear mixed effects models to all samples including the un-replicated samples. Including the large number of un-replicated samples improves ICC estimates dramatically. The method accommodates any replicate design.

Key Metrics

Version 1.1
R ≥ 3.1.0
Published 2017-08-23 2431 days ago
Needs compilation? no
License GPL-3
CRAN checks CpGFilter results

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Maintainer

Maintainer

Jun Chen

chen.jun2@mayo.edu

Authors

Jun Chen

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

CpGFilter archive

Depends

R ≥ 3.1.0

Imports

stats
matrixStats