CRAN/E | Coxmos

Coxmos

Cox MultiBlock Survival

Installation

About

This software package provides Cox survival analysis for high-dimensional and multiblock datasets. It encompasses a suite of functions dedicated from the classical Cox regression to newest analysis, including Cox proportional hazards model, Stepwise Cox regression, and Elastic-Net Cox regression, Sparse Partial Least Squares Cox regression (sPLS-COX) incorporating three distinct strategies, and two Multiblock-PLS Cox regression (MB-sPLS-COX) methods. This tool is designed to adeptly handle high-dimensional data, and provides tools for cross-validation, plot generation, and additional resources for interpreting results. While references are available within the corresponding functions, key literature is mentioned below. Terry M Therneau (2024) , Noah Simon et al. (2011) doi:10.18637/jss.v039.i05, Philippe Bastien et al. (2005) doi:10.1016/j.csda.2004.02.005, Philippe Bastien (2008) doi:10.1016/j.chemolab.2007.09.009, Philippe Bastien et al. (2014) doi:10.1093/bioinformatics/btu660, Kassu Mehari Beyene and Anouar El Ghouch (2020) doi:10.1002/sim.8671, Florian Rohart et al. (2017) doi:10.1371/journal.pcbi.1005752.

github.com/BiostatOmics/Coxmos
Bug report File report

Key Metrics

Version 1.0.2
R ≥ 4.1.0
Published 2024-03-25 39 days ago
Needs compilation? yes
License CC BY 4.0
CRAN checks Coxmos results

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Maintainer

Maintainer

Pedro Salguero García

pedrosalguerog@gmail.com

Authors

Pedro Salguero García

aut / cre / rev

Sonia Tarazona Campos

ths

Ana Conesa Cegarra

ths

Kassu Mehari Beyene

ctb

Luis Meira Machado

ctb

Marta Sestelo

ctb

Artur Araújo

ctb

Material

README
Reference manual
Package source

Vignettes

Step-by-step guide to the MO-Coxmos pipeline
Step-by-step guide to the Coxmos pipeline

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

Coxmos archive

Depends

R ≥ 4.1.0

Imports

caret
cowplot
furrr
future
ggrepel
ggplot2
ggpubr
glmnet
MASS
mixOmics
progress
purrr
Rdpack
scattermore
stats
survcomp
survival
survminer
svglite
tidyr
utils

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