CRAN/E | CovidMutations

CovidMutations

Mutation Analysis Toolkit for COVID-19 (Coronavirus Disease 2019)

Installation

About

A feasible framework for mutation analysis and reverse transcription polymerase chain reaction (RT-PCR) assay evaluation of COVID-19, including mutation profile visualization, statistics and mutation ratio of each assay. The mutation ratio is conducive to evaluating the coverage of RT-PCR assays in large-sized samples. Mercatelli, D. and Giorgi, F. M. (2020) doi:10.20944/preprints202004.0529.v1.

github.com/MSQ-123/CovidMutations
Bug report File report

Key Metrics

Version 0.1.3
R ≥ 3.6
Published 2020-09-18 1316 days ago
Needs compilation? no
License Artistic-2.0
CRAN checks CovidMutations results

Downloads

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Last 365 days 2.148 -22%

Maintainer

Maintainer

Shaoqian Ma

shaoqianma@qq.com

Authors

Shaoqian Ma

aut / cre

Yongyou Zhang

aut

Material

README
NEWS
Reference manual
Package source

In Views

Epidemiology

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Depends

R ≥ 3.6

Imports

ggplot2
cowplot
seqinr
stringr
grDevices
graphics
utils
ggpubr
dplyr
VennDiagram

Suggests

testthat