CRAN/E | CoordinateCleaner

CoordinateCleaner

Automated Cleaning of Occurrence Records from Biological Collections

Installation

About

Automated flagging of common spatial and temporal errors in biological and paleontological collection data, for the use in conservation, ecology and paleontology. Includes automated tests to easily flag (and exclude) records assigned to country or province centroid, the open ocean, the headquarters of the Global Biodiversity Information Facility, urban areas or the location of biodiversity institutions (museums, zoos, botanical gardens, universities). Furthermore identifies per species outlier coordinates, zero coordinates, identical latitude/longitude and invalid coordinates. Also implements an algorithm to identify data sets with a significant proportion of rounded coordinates. Especially suited for large data sets. The reference for the methodology is: Zizka et al. (2019) doi:10.1111/2041-210X.13152.

Citation CoordinateCleaner citation info
ropensci.github.io/CoordinateCleaner/
System requirements GDAL (>= 2.0.1)
Bug report File report

Key Metrics

Version 3.0.1
R ≥ 3.5.0
Published 2023-10-24 176 days ago
Needs compilation? no
License GPL-3
CRAN checks CoordinateCleaner results
Language en-gb

Downloads

Yesterday 16
Last 7 days 163 -52%
Last 30 days 1.251 -2%
Last 90 days 4.205 +1%
Last 365 days 15.609 +11%

Maintainer

Maintainer

Alexander Zizka

zizka.alexander@gmail.com

Authors

Alexander Zizka

aut / cre

Daniele Silvestro

ctb

Tobias Andermann

ctb

Josue Azevedo

ctb

Camila Duarte Ritter

ctb

Daniel Edler

ctb

Harith Farooq

ctb

Andrei Herdean

ctb

Maria Ariza

ctb

Ruud Scharn

ctb

Sten Svanteson

ctb

Niklas Wengstrom

ctb

Vera Zizka

ctb

Alexandre Antonelli

ctb

Bruno Vilela

ctb

(Bruno updated the package to remove dependencies on sp, raster, rgdal, maptools, and rgeos packages)

Irene Steves

rev

(Irene reviewed the package for ropensci, see <https://github.com/ropensci/onboarding/issues/210>)

Francisco Rodriguez-Sanchez

rev

(Francisco reviewed the package for ropensci, see <https://github.com/ropensci/onboarding/issues/210>)

Material

README
NEWS
Reference manual
Package source

Vignettes

Cleaning GBIF data for the use in biogeography
Cleaning fossil data for the use in biogeography and palaeontology
Comparison of CoordinateCleaner to other tools
Using customized gazetteers

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

CoordinateCleaner archive

Depends

R ≥ 3.5.0

Imports

dplyr
geosphere
ggplot2
graphics
grDevices
methods
rgbif
rnaturalearth ≥ 0.3.2
stats
terra
tidyselect
utils

Suggests

countrycode
covr
knitr
magrittr
maps
rmarkdown
rnaturalearthdata
sf
testthat
viridis

Reverse Imports

bdc
BeeBDC

Reverse Suggests

dynamicSDM