CRAN/E | ClustAssess

ClustAssess

Tools for Assessing Clustering

Installation

About

A set of tools for evaluating clustering robustness using proportion of ambiguously clustered pairs (Senbabaoglu et al. (2014) doi:10.1038/srep06207), as well as similarity across methods and method stability using element-centric clustering comparison (Gates et al. (2019) doi:10.1038/s41598-019-44892-y). Additionally, this package enables stability-based parameter assessment for graph-based clustering pipelines typical in single-cell data analysis.

github.com/Core-Bioinformatics/ClustAssess
Bug report File report

Key Metrics

Version 0.3.0
Published 2022-01-26 812 days ago
Needs compilation? yes
License MIT
License File
CRAN checks ClustAssess results

Downloads

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Maintainer

Maintainer

Arash Shahsavari

as3006@cam.ac.uk

Authors

Arash Shahsavari

aut / cre

Andi Munteanu

aut

Irina Mohorianu

aut

Material

README
Reference manual
Package source

Vignettes

Evaluating single-cell clustering with ClustAssess
Comparing soft and hierarchical clusterings with element-centric similarity

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

ClustAssess archive

Imports

ggplot2
dplyr
fastcluster
rlang
Matrix
igraph
magrittr
Rcpp
methods
stats
foreach
doParallel
irlba
progress
reshape2
stringr
uwot

Suggests

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LinkingTo

Rcpp