CRAN/E | CeRNASeek

CeRNASeek

Identification and Analysis of ceRNA Regulation

Installation

About

Provides several functions to identify and analyse miRNA sponge, including popular methods for identifying miRNA sponge interactions, two types of global ceRNA regulation prediction methods and four types of context-specific prediction methods( Li Y et al.(2017) doi:10.1093/bib/bbx137), which are based on miRNA-messenger RNA regulation alone, or by integrating heterogeneous data, respectively. In addition, For predictive ceRNA relationship pairs, this package provides several downstream analysis algorithms, including regulatory network analysis and functional annotation analysis, as well as survival prognosis analysis based on expression of ceRNA ternary pair.

Key Metrics

Version 2.1.3
R ≥ 3.1.0
Published 2020-04-29 1447 days ago
Needs compilation? no
License GPL-3
CRAN checks CeRNASeek results

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Maintainer

Maintainer

Mengying Zhang

zhangmengying@hrbmu.edu.cn

Authors

Mengying Zhang
Yongsheng Li
Juan Xu*
Xia Li*

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

CeRNASeek archive

Depends

R ≥ 3.1.0

Imports

gtools
igraph
survival
parallel