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About
Sample and cell filtering as well as visualisation of output metrics from 'Cell Ranger' by Grace X.Y. Zheng et al. (2017) doi:10.1038/ncomms14049. 'CRMetrics' allows for easy plotting of output metrics across multiple samples as well as comparative plots including statistical assessments of these. 'CRMetrics' allows for easy removal of ambient RNA using 'SoupX' by Matthew D Young and Sam Behjati (2020) doi:10.1093/gigascience/giaa151 or 'CellBender' by Stephen J Fleming et al. (2022) doi:10.1101/791699. Furthermore, it is possible to preprocess data using 'Pagoda2' by Nikolas Barkas et al. (2021)
github.com/khodosevichlab/CRMetrics | |
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