CRAN/E | CNVRG

CNVRG

Dirichlet Multinomial Modeling of Relative Abundance Data

Installation

About

Implements Dirichlet multinomial modeling of relative abundance data using functionality provided by the 'Stan' software. The purpose of this package is to provide a user friendly way to interface with 'Stan' that is suitable for those new to modeling. For more regarding the modeling mathematics and computational techniques we use see our publication in Molecular Ecology Resources titled 'Dirichlet multinomial modeling outperforms alternatives for analysis of ecological count data' (Harrison et al. 2020 doi:10.1111/1755-0998.13128).

Citation CNVRG citation info
System requirements GNU make

Key Metrics

Version 1.0.0
R ≥ 3.4.0
Published 2021-09-04 958 days ago
Needs compilation? yes
License GPL-3
CRAN checks CNVRG results

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Maintainer

Maintainer

Joshua Harrison

joshua.grant.harrison@gmail.com

Authors

Joshua Harrison

aut / cre

Vivaswat Shastry

aut

W. John Calder

aut

C. Alex Buerkle

aut

Material

README
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

CNVRG archive

Depends

R ≥ 3.4.0

Imports

methods
Rcpp ≥ 0.12.0
rstan ≥ 2.18.1
vegan
rstantools ≥ 2.1.1
tibble

LinkingTo

BH ≥ 1.66.0
Rcpp ≥ 0.12.0
RcppEigen ≥ 0.3.3.3.0
RcppParallel ≥ 5.0.1
rstan ≥ 2.18.1
StanHeaders ≥2.18.0