CRAN/E | CLONETv2

CLONETv2

Clonality Estimates in Tumor

Installation

About

Analyze data from next-generation sequencing experiments on genomic samples. 'CLONETv2' offers a set of functions to compute allele specific copy number and clonality from segmented data and SNPs position pileup. The package has also calculated the clonality of single nucleotide variants given read counts at mutated positions. The package has been developed at the laboratory of Computational and Functional Oncology, Department of CIBIO, University of Trento (Italy), under the supervision of prof Francesca Demichelis. References: Prandi et al. (2014) doi:10.1186/s13059-014-0439-6; Carreira et al. (2014) doi:10.1126/scitranslmed.3009448; Romanel et al. (2015) doi:10.1126/scitranslmed.aac9511.

Key Metrics

Version 2.2.1
R ≥ 3.1
Published 2021-10-13 917 days ago
Needs compilation? no
License MIT
License File
CRAN checks CLONETv2 results

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Maintainer

Maintainer

Yari Ciani

yari.ciani@unitn.it

Authors

Davide Prandi

aut

Alessandro Romanel

ctb

Tarcisio Fedrizzi

ctb

Yari Ciani

cre

Material

NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

CLONETv2 archive

Depends

R ≥ 3.1

Imports

parallel
sets
ggplot2
ggrepel
arules
dbscan