CRAN/E | CIDER

CIDER

Meta-Clustering for Single-Cell Data Integration and Evaluation

Installation

About

A workflow of (a) meta-clustering based on inter-group similarity measures and (b) a ground-truth-free test metric to assess the biological correctness of integration in real datasets. See Hu Z, Ahmed A, Yau C (2021) doi:10.1101/2021.03.29.437525 for more details.

github.com/zhiyhu/CIDER
zhiyhu.github.io/CIDER/
Bug report File report

Key Metrics

Version 0.99.1
R ≥ 3.5.0
Published 2022-09-19 578 days ago
Needs compilation? no
License MIT
License File
CRAN checks CIDER results

Downloads

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Maintainer

Maintainer

Zhiyuan Hu

zhiyuan.cheryl.hu@gmail.com

Authors

Zhiyuan Hu

aut / cre

Christopher Yau

aut

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

CIDER archive

Depends

R ≥ 3.5.0

Imports

limma ≥ 3.42.0
edgeR ≥ 3.28.0
stats ≥ 3.6.2
foreach ≥ 1.4.7
Seurat ≥ 3.1.0
utils ≥ 3.6.2
pheatmap ≥ 1.0.0
dbscan ≥ 1.1-5
kernlab ≥ 0.9-29
doParallel
igraph
parallel
graphics
ggplot2
viridis

Suggests

knitr
rmarkdown
testthat
statmod ≥ 1.2.2
cowplot