CRAN/E | CB2

CB2

CRISPR Pooled Screen Analysis using Beta-Binomial Test

Installation

About

Provides functions for hit gene identification and quantification of sgRNA (single-guided RNA) abundances for CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) pooled screen data analysis. Details are in Jeong et al. (2019) doi:10.1101/gr.245571.118 and Baggerly et al. (2003) doi:10.1093/bioinformatics/btg173.

Key Metrics

Version 1.3.4
R ≥ 3.5.0
Published 2020-07-24 1371 days ago
Needs compilation? yes
License MIT
License File
CRAN checks CB2 results

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Maintainer

Maintainer

Hyun-Hwan Jeong

jeong.hyunhwan@gmail.com

Authors

Hyun-Hwan Jeong

aut / cre

Material

README
Reference manual
Package source

Vignettes

Handling the input matrix in CB2
CB2 Tutorial

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

CB2 archive

Depends

R ≥ 3.5.0

Imports

Rcpp ≥ 0.12.16
metap
magrittr
dplyr
tibble
stringr
ggplot2
tidyr
glue
pheatmap
tools
readr
parallel
R.utils

Suggests

testthat
knitr
rmarkdown

LinkingTo

Rcpp
RcppArmadillo