CAMML

Cell-Typing using Variance Adjusted Mahalanobis Distances with Multi-Labeling

Installation

About

Creates multi-label cell-types for single-cell RNA-sequencing data based on weighted VAM scoring of cell-type specific gene sets. Schiebout, Frost (2022) .

Dartmouth College

Key Metrics

Version	0.2.3
R	≥ 3.6.0
Published	2022-10-10 355 days ago
Needs compilation?	no
License	GPL-2
License	GPL-3
CRAN checks	CAMML results

Downloads

Last 24 hours	0 -100%
Last 7 days	45 -40%
Last 30 days	237 -11%
Last 90 days	732 -13%
Last 365 days	3.349 +8%

Maintainer

Courtney Schiebout

courtney.t.schiebout.gr@dartmouth.edu

Authors

H. Robert Frost	aut
Courtney Schiebout	aut / cre

Material

Reference manual
Package source

Vignettes

CAMML_FigureVignette
CAMMLQuick
CAMML
ChIMP

macOS

r-release	arm64
r-oldrel	arm64
r-release	x86_64
r-oldrel	x86_64

Windows

r-devel	x86_64
r-release	x86_64
r-oldrel	x86_64

Old Sources

CAMML archive

Depends

≥ 3.6.0

Imports

VAM
Seurat	≥ 4.0.0
MASS
Matrix	≥ 1.3.3
utils
BiocManager
org.Hs.eg.db
org.Dr.eg.db
org.Mm.eg.db
AnnotationDbi
SeuratObject	≥ 4.0.0
methods
edgeR

Suggests

sctransform

≥ 0.3.2