CRAN/E | CAMML

CAMML

Cell-Typing using Variance Adjusted Mahalanobis Distances with Multi-Labeling

Installation

About

Creates multi-label cell-types for single-cell RNA-sequencing data based on weighted VAM scoring of cell-type specific gene sets. Schiebout, Frost (2022) .

Copyright Dartmouth College

Key Metrics

Version 1.0.0
R ≥ 3.6.0
Published 2023-11-13 136 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks CAMML results

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Maintainer

Maintainer

Courtney Schiebout

courtney.t.schiebout.gr@dartmouth.edu

Authors

H. Robert Frost

aut

Courtney Schiebout

aut / cre

Material

Reference manual
Package source

Vignettes

CAMML_FigureVignette
CAMMLQuick
CAMML
ChIMP

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

CAMML archive

Depends

R ≥ 3.6.0

Imports

VAM
Seurat ≥ 4.0.0
MASS
Matrix ≥ 1.3.3
utils
BiocManager
org.Hs.eg.db
org.Dr.eg.db
org.Mm.eg.db
AnnotationDbi
SeuratObject ≥ 4.0.0
methods
edgeR

Suggests

sctransform ≥ 0.3.2