CRAN/E | CALANGO

CALANGO

Comparative Analysis with Annotation-Based Genomic Components

Installation

About

A first-principle, phylogeny-aware comparative genomics tool for investigating associations between terms used to annotate genomic components (e.g., Pfam IDs, Gene Ontology terms,) with quantitative or rank variables such as number of cell types, genome size, or density of specific genomic elements. See the project website for more information, documentation and examples, and doi:10.1016/j.patter.2023.100728 for the full paper.

Citation CALANGO citation info
labpackages.github.io/CALANGO/
Bug report File report

Key Metrics

Version 1.0.16
R ≥ 3.6.0
Published 2023-04-26 358 days ago
Needs compilation? no
License GPL-2
CRAN checks CALANGO results
Language en-US

Downloads

Yesterday 7 0%
Last 7 days 34 -58%
Last 30 days 287 -12%
Last 90 days 1.099 +23%
Last 365 days 3.986 -5%

Maintainer

Maintainer

Felipe Campelo

fcampelo@gmail.com

Authors

Francisco Lobo

aut

Felipe Campelo

aut / cre

Jorge Augusto Hongo

aut

Giovanni Marques de Castro

aut

Gabriel Almeida

sad / dnc

Material

README
NEWS
Reference manual
Package source

In Views

Phylogenetics

Vignettes

CALANGO Parameters

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

CALANGO archive

Depends

R ≥ 3.6.0

Imports

assertthat ≥ 0.2.1
pbmcapply ≥ 1.5.0
ape ≥ 5.3.0
rmarkdown ≥ 2.1.0
nlme ≥ 3.1.0
BiocManager ≥1.30.10
taxize ≥ 0.9.92
dendextend ≥ 1.15.2
heatmaply ≥ 1.1.0
ggplot2 ≥ 2.3.2
plotly ≥ 4.9.2
DT ≥0.13
htmltools ≥ 0.5.0
htmlwidgets ≥ 1.5.1
pkgdown ≥ 1.5.1
knitr ≥ 1.28

Suggests

AnnotationDbi
KEGGREST
GO.db