CRAN/E | CACIMAR

CACIMAR

Cross-Species Analysis of Cell Identities, Markers and Regulations

Installation

About

A toolkit to perform cross-species analysis based on scRNA-seq data. This package contains 5 main features. (1) identify Markers in each cluster. (2) Cell type annotation (3) identify conserved markers. (4) identify conserved cell types. (5) identify conserved modules of regulatory networks.

github.com/jiang-junyao/CACIMAR
Bug report File report

Key Metrics

Version 1.0.0
R ≥ 4.0
Published 2022-05-18 708 days ago
Needs compilation? no
License MIT
License File
CRAN checks CACIMAR results

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Maintainer

Maintainer

Junyao Jiang

jiangjunyao789@163.com

Authors

Junyao Jiang

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Depends

R ≥ 4.0
Seurat

Imports

pheatmap
pbapply
psych
ROCR
reshape2
dplyr
grDevices
stats
methods
viridisLite

Suggests

knitr
testthat ≥ 3.0.0