CRAN/E | BinMat

BinMat

Processes Binary Data Obtained from Fragment Analysis (Such as AFLPs, ISSRs, and RFLPs)

Installation

About

A molecular genetics tool that processes binary data from fragment analysis. It consolidates replicate sample pairs, outputs summary statistics, and produces hierarchical clustering trees and nMDS plots. This package was developed from the publication available here: . The GUI version of this package is available on the R Shiny online server at: or it is accessible via GitHub by typing: shiny::runGitHub("BinMat", "clarkevansteenderen") into the console in R. Two real-world datasets accompany the package: an AFLP dataset of Bunias orientalis samples from Tewes et. al. (2017) , and an ISSR dataset of Nymphaea specimens from Reid et. al. (2021) . The authors of these publications are thanked for allowing the use of their data.

Key Metrics

Version 0.1.5
R ≥ 3.0
Published 2022-03-06 781 days ago
Needs compilation? no
License GPL-3
CRAN checks BinMat results

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Maintainer

Maintainer

Clarke van Steenderen

vsteenderen@gmail.com

Authors

Clarke van Steenderen

aut / cre

Material

Reference manual
Package source

Vignettes

BinMat

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

BinMat archive

Depends

R ≥ 3.0

Imports

pvclust ≥ 2.0
MASS ≥ 7.3
stats ≥ 3.4.0
graphics ≥ 3.4.0
base ≥ 3.4.0
ggpubr ≥ 0.4.0
tibble ≥3.1.4

Suggests

knitr
rmarkdown