CRAN/E | BiBitR

BiBitR

R Wrapper for Java Implementation of BiBit

Installation

About

A simple R wrapper for the Java BiBit algorithm from "A biclustering algorithm for extracting bit-patterns from binary datasets" from Domingo et al. (2011) doi:10.1093/bioinformatics/btr464. An simple adaption for the BiBit algorithm which allows noise in the biclusters is also introduced as well as a function to guide the algorithm towards given (sub)patterns. Further, a workflow to derive noisy biclusters from discoverd larger column patterns is included as well.

System requirements Java

Key Metrics

Version 0.3.1
Published 2017-06-30 2486 days ago
Needs compilation? no
License GPL-3
CRAN checks BiBitR results

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Maintainer

Maintainer

De Troyer Ewoud

ewoud.detroyer@uhasselt.be

Authors

De Troyer Ewoud

Material

README
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

BiBitR archive

Imports

stats
foreign
methods
utils
viridis
cluster
dendextend
lattice
grDevices
graphics
randomcoloR
biclust

Reverse Depends

RcmdrPlugin.BiclustGUI

Reverse Imports

miRSM