CRAN/E | BASiNETEntropy

BASiNETEntropy

Classification of RNA Sequences using Complex Network and Information Theory

Installation

About

It makes the creation of networks from sequences of RNA, with this is done the abstraction of characteristics of these networks with a methodology of maximum entropy for the purpose of making a classification between the classes of the sequences. There are two data present in the 'BASiNET' package, "mRNA", and "ncRNA" with 10 sequences. These sequences were taken from the data set used in the article (LI, Aimin; ZHANG, Junying; ZHOU, Zhongyin, 2014) doi:10.1186/1471-2105-15-311, these sequences are used to run examples.

Key Metrics

Version 0.99.6
R ≥ 4.1.0
Published 2023-08-16 253 days ago
Needs compilation? no
License GPL-3
CRAN checks BASiNETEntropy results

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Maintainer

Maintainer

Fabricio Martins Lopes

fabricio@utfpr.edu.br

Authors

Murilo Montanini Breve

aut

Matheus Henrique Pimenta-Zanon

aut

Fabricio Martins Lopes

aut / cre

Material

README
Reference manual
Package source

Vignettes

Classification of RNA sequences

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

BASiNETEntropy archive

Depends

R ≥ 4.1.0

Imports

igraph
Biostrings
randomForest

Suggests

knitr
rmarkdown