CRAN/E | BASiNET

BASiNET

Classification of RNA Sequences using Complex Network Theory

Installation

About

It makes the creation of networks from sequences of RNA, with this is done the abstraction of characteristics of these networks with a methodology of threshold for the purpose of making a classification between the classes of the sequences. There are four data present in the 'BASiNET' package, "sequences", "sequences2", "sequences-predict" and "sequences2-predict" with 11, 10, 11 and 11 sequences respectively. These sequences were taken from the data set used in the article (LI, Aimin; ZHANG, Junying; ZHOU, Zhongyin, 2014) doi:10.1186/1471-2105-15-311, these sequences are used to run examples. The BASiNET was published on Nucleic Acids Research, (ITO, Eric; KATAHIRA, Isaque; VICENTE, Fábio; PEREIRA, Felipe; LOPES, Fabrício, 2018) doi:10.1093/nar/gky462.

Key Metrics

Version 0.0.5
R ≥ 3.4.0
Published 2022-08-19 615 days ago
Needs compilation? no
License GPL-3
CRAN checks BASiNET results

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Maintainer

Maintainer

Fabricio Martins Lopes

fabricio@utfpr.edu.br

Authors

Eric Augusto Ito

aut

Fabricio Martins Lopes

aut / cre

Material

Reference manual
Package source

Vignettes

Classification of mRNA and lncRNA sequences

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

BASiNET archive

Depends

R ≥ 3.4.0

Imports

igraph
Biostrings
RWeka
randomForest
rmcfs
grDevices
graphics
stats
rJava

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