CRAN/E | AnanseSeurat

AnanseSeurat

Construct ANANSE GRN-Analysis Seurat

Installation

About

Enables gene regulatory network (GRN) analysis on single cell clusters, using the GRN analysis software 'ANANSE', Xu et al.(2021) doi:10.1093/nar/gkab598. Export data from 'Seurat' objects, for GRN analysis by 'ANANSE' implemented in 'snakemake'. Finally, incorporate results for visualization and interpretation.

github.com/JGASmits/AnanseSeurat/
Bug report File report

Key Metrics

Version 1.2.0
R ≥ 3.50
Published 2023-11-11 157 days ago
Needs compilation? no
License Apache License (≥ 2)
CRAN checks AnanseSeurat results

Downloads

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Maintainer

Maintainer

Jos Smits

Jsmits@science.ru.nl

Authors

Jos Smits

aut / cre / cph

Huiqing Jo Zhou

aut / fnd / cph

Material

README
NEWS
Reference manual
Package source

Vignettes

introduction

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

AnanseSeurat archive

Depends

R ≥ 3.50

Imports

dplyr
ggplot2
ggpubr
magrittr
patchwork
png
purrr
rlang
Seurat
stringr
utils

Suggests

covr
knitr
rmarkdown
Signac
testthat ≥ 3.0.0