CRAN/E | AmpGram

AmpGram

Prediction of Antimicrobial Peptides

Installation

About

Predicts antimicrobial peptides using random forests trained on the n-gram encoded peptides. The implemented algorithm can be accessed from both the command line and shiny-based GUI. The AmpGram model is too large for CRAN and it has to be downloaded separately from the repository: .

github.com/michbur/AmpGram
Bug report File report

Key Metrics

Version 1.0
R ≥ 3.5.0
Published 2020-05-31 1419 days ago
Needs compilation? no
License GPL-3
CRAN checks AmpGram results
Language en-US

Downloads

Yesterday 6
Last 7 days 22 -44%
Last 30 days 196 -3%
Last 90 days 783 +24%
Last 365 days 2.646 -8%

Maintainer

Maintainer

Michal Burdukiewicz

michalburdukiewicz@gmail.com

Authors

Michal Burdukiewicz

cre / aut

Katarzyna Sidorczuk

ctb

Filip Pietluch

ctb

Dominik Rafacz

aut

Stefan Roediger

ctb

Jaroslaw Chilimoniuk

ctb

Material

README
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Depends

R ≥ 3.5.0

Imports

biogram
devtools
pbapply
ranger
shiny
stringi

Suggests

DT
ggplot2
pander
rmarkdown
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