CRAN/E | APackOfTheClones

APackOfTheClones

Visualization of T-Cell Clonal Expansion

Installation

About

Visualize T-cell clonal expansion via circle-packing. 'APackOfTheClones' can integrate single-cell RNA sequencing and T-cell receptor libraries from the 10X genomics Single Cell Immune Profiling and Cell Ranger pipeline, to produce a simple, publication-ready visualization of the clonal expansion. The method was originally implemented by Murray Christian and Ben Murrell in the following immunology study: Ma et al. (2021) doi:10.1126/sciimmunol.abg6356.

Citation APackOfTheClones citation info
qile0317.github.io/APackOfTheClones/
Bug report File report

Key Metrics

Version 0.1.3
R ≥ 3.5.0
Published 2023-07-16 75 days ago
Needs compilation? yes
License MIT
License File
CRAN checks APackOfTheClones results
Language en-US

Downloads

Last 24 hours 1 -80%
Last 7 days 22 +10%
Last 30 days 56 -64%
Last 90 days 569 -6%
Last 365 days 1.168

Maintainer

Maintainer

Qile Yang

qile0317@gmail.com

Authors

Qile Yang

cre / aut / cph

Material

README
NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

APackOfTheClones archive

Depends

R ≥ 3.5.0

Imports

data.table
dplyr
ggforce
ggplot2
grDevices
hash
Rcpp
rlang
Seurat
stats
utils

Suggests

covr
knitr
rmarkdown
sf
spelling
testthat ≥ 3.0.0
vdiffr
xml2

LinkingTo

Rcpp
testthat