CRAN/E | APackOfTheClones

APackOfTheClones

Visualization of Clonal Expansion for Single Cell Immune Profiles

Installation

About

Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles. The method was originally implemented by Murray Christian and Ben Murrell in the following immunology study: Ma et al. (2021) doi:10.1126/sciimmunol.abg6356.

Citation APackOfTheClones citation info
qile0317.github.io/APackOfTheClones/
Bug report File report

Key Metrics

Version 1.2.0
R ≥ 4.1.0
Published 2024-04-16 14 days ago
Needs compilation? yes
License MIT
License File
CRAN checks APackOfTheClones results
Language en-US

Downloads

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Maintainer

Maintainer

Qile Yang

qile.yang@berkeley.edu

Authors

Qile Yang

cre / aut / cph

Material

Reference manual
Package source

Vignettes

Installing APackOfTheClones
Storing and Fine-Tuning APackOfTheClones Runs
Working With Clonotypes Shared Across Clusters
Clonal Analysis Utilities in APackOfTheClones
APackOfTheClones Essentials

macOS

r-prerel

arm64

r-release

arm64

r-oldrel

arm64

r-prerel

x86_64

r-release

x86_64

Windows

r-prerel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

APackOfTheClones archive

Depends

R ≥ 4.1.0

Imports

dplyr
ggforce
ggplot2
grDevices
hash
lifecycle
magrittr
methods
Rcpp
rlang
Seurat
SeuratObject

Suggests

cowplot
covr
knitr
rmarkdown
sf
spelling
testthat ≥3.0.0
vdiffr

LinkingTo

Rcpp