CRAN/E | ACNE

ACNE

Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization

Installation

About

A summarization method to estimate allele-specific copy number signals for Affymetrix SNP microarrays using non-negative matrix factorization (NMF).

github.com/HenrikBengtsson/ACNE
Bug report File report

Key Metrics

Version 0.9.0
R ≥ 3.0.0
Published 2023-06-25 97 days ago
Needs compilation? no
License LGPL-2.1
License LGPL-3
CRAN checks ACNE results

Downloads

Last 24 hours 0 -100%
Last 7 days 70 -31%
Last 30 days 359 -5%
Last 90 days 1.190 +4%
Last 365 days 4.374 -33%

Maintainer

Maintainer

Henrik Bengtsson

henrikb@braju.com

Authors

Maria Ortiz

aut

Henrik Bengtsson

aut / cre / cph

Angel Rubio

aut

Material

README
NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

ACNE archive

Depends

R ≥ 3.0.0
aroma.affymetrix ≥ 2.14.0

Imports

MASS
R.methodsS3 ≥ 1.7.0
R.oo ≥ 1.23.0
R.utils ≥2.1.0
matrixStats ≥ 0.50.0
R.filesets ≥ 2.9.0
aroma.core ≥ 2.14.0

Suggests

DNAcopy