CRAN/E | utr.annotation

utr.annotation

Annotate Variants in the Untranslated Regions

Installation

About

A fast, user-friendly tool for annotating potential deleterious variants in the untranslated regions for both human and mouse species. Y Liu, JD Dougherty (2021) doi:10.1101/2021.06.23.449510.

System requirements Linux or MacOS Intel chip tensorflow (1.14.0)

Key Metrics

Version 1.0.4
R ≥ 3.5.0
Published 2021-08-23 983 days ago
Needs compilation? no
License GPL (≥ 3)
CRAN checks utr.annotation results

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Maintainer

Maintainer

Yating Liu

yatinghust@gmail.com

Authors

Yating Liu

aut / cre

Joseph D. Dougherty

aut

Material

README
NEWS
Reference manual
Package source

Vignettes

Introduction

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

utr.annotation archive

Depends

R ≥ 3.5.0

Imports

parallel
doParallel
data.table
readr
stringr
biomaRt
vcfR
Biostrings
dplyr
tidyr
keras
AnnotationHub
ensembldb
AnnotationFilter
BiocGenerics
GenomicFeatures
GenomicRanges
IRanges
foreach
rtracklayer
stats
utils
xml2

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