CRAN/E | ubms

ubms

Bayesian Models for Data from Unmarked Animals using 'Stan'

Installation

About

Fit Bayesian hierarchical models of animal abundance and occurrence via the 'rstan' package, the R interface to the 'Stan' C++ library. Supported models include single-season occupancy, dynamic occupancy, and N-mixture abundance models. Covariates on model parameters are specified using a formula-based interface similar to package 'unmarked', while also allowing for estimation of random slope and intercept terms. References: Carpenter et al. (2017) doi:10.18637/jss.v076.i01; Fiske and Chandler (2011) doi:10.18637/jss.v043.i10.

Citation ubms citation info
kenkellner.com/ubms/
System requirements GNU make
Bug report File report

Key Metrics

Version 1.2.6
R ≥ 3.4.0
Published 2023-09-11 231 days ago
Needs compilation? yes
License GPL (≥ 3)
CRAN checks ubms results

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Maintainer

Maintainer

Ken Kellner

contact@kenkellner.com

Authors

Ken Kellner

cre / aut

Material

NEWS
Reference manual
Package source

Vignettes

Comparing models fit in ubms and JAGS
Random effects in ubms
Spatial Models in ubms
Overview of ubms

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

ubms archive

Depends

R ≥ 3.4.0
unmarked

Imports

ggplot2 ≥ 2.0.0
gridExtra
lme4
loo
Matrix ≥ 1.5-0
methods
pbapply
Rcpp ≥ 0.12.0
rlang
RSpectra
rstan ≥2.26.0
rstantools ≥ 2.0.0
stats

Suggests

covr
devtools
knitr
pkgdown
raster
rmarkdown
roxygen2
testthat

LinkingTo

BH ≥ 1.66.0
Rcpp ≥ 0.12.0
RcppArmadillo ≥0.9.300.2.0
RcppEigen ≥ 0.3.3.3.0
rstan ≥ 2.26.0
StanHeaders ≥ 2.26.0
RcppParallel ≥ 5.0.2