CRAN/E | treedater

treedater

Fast Molecular Clock Dating of Phylogenetic Trees with Rate Variation

Installation

About

Functions for estimating times of common ancestry and molecular clock rates of evolution using a variety of evolutionary models, parametric and nonparametric bootstrap confidence intervals, methods for detecting outlier lineages, root-to-tip regression, and a statistical test for selecting molecular clock models. The methods are described in Volz, E.M. and S.D.W. Frost (2017) doi:10.1093/ve/vex025.

Key Metrics

Version 0.5.0
Published 2020-01-26 1555 days ago
Needs compilation? no
License GPL-2
CRAN checks treedater results

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Maintainer

Maintainer

Erik Volz

erik.volz@gmail.com

Authors

Erik Volz

aut / cre

Material

README
Reference manual
Package source

Vignettes

H3N2

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

treedater archive

Depends

ape ≥ 5.0
limSolve ≥ 1.5.5.0

Suggests

lubridate
ggplot2
foreach
iterators
mgcv
knitr
rmarkdown