CRAN/E | templateICAr

templateICAr

Estimate Brain Networks and Connectivity with ICA and Empirical Priors

Installation

About

Implements the template ICA (independent components analysis) model proposed in Mejia et al. (2020) doi:10.1080/01621459.2019.1679638 and the spatial template ICA model proposed in proposed in Mejia et al. (2022) doi:10.1080/10618600.2022.2104289. Both models estimate subject-level brain as deviations from known population-level networks, which are estimated using standard ICA algorithms. Both models employ an expectation-maximization algorithm for estimation of the latent brain networks and unknown model parameters. Includes direct support for 'CIFTI', 'GIFTI', and 'NIFTI' neuroimaging file formats.

Citation templateICAr citation info
github.com/mandymejia/templateICAr
Bug report File report

Key Metrics

Version 0.6.4
R ≥ 3.6.0
Published 2024-01-17 107 days ago
Needs compilation? yes
License GPL-3
CRAN checks templateICAr results

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Maintainer

Maintainer

Amanda Mejia

mandy.mejia@gmail.com

Authors

Amanda Mejia

aut / cre

Damon Pham

aut

Daniel Spencer

ctb

Mary Beth Nebel

ctb

Material

README
NEWS
Reference manual
Package source

Additional repos

inla.r-inla-download.org/R/testing

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

templateICAr archive

Depends

R ≥ 3.6.0

Imports

abind
excursions
expm
fMRItools ≥ 0.2.2
ica
Matrix
matrixStats
methods
pesel
Rcpp
SQUAREM
stats
utils

Suggests

ciftiTools
RNifti
oro.nifti
gifti
covr
doParallel
foreach
knitr
rmarkdown
INLA
parallel
testthat ≥ 3.0.0

LinkingTo

RcppEigen
Rcpp

Reverse Suggests

fMRItools