CRAN/E | sequenza

sequenza

Copy Number Estimation from Tumor Genome Sequencing Data

Installation

About

Tools to analyze genomic sequencing data from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization.

Citation sequenza citation info
sequenzatools.bitbucket.io
Mailing list: groups.google.com/forum/#!forum/sequenza-user-group
System requirements pandoc (>= 1.12.3)
Bug report File report

Key Metrics

Version 3.0.0
R ≥ 3.2.0
Published 2019-05-09 1821 days ago
Needs compilation? no
License GPL-3
CRAN checks sequenza results

Downloads

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Last 7 days 20 -9%
Last 30 days 107 -5%
Last 90 days 321 -4%
Last 365 days 1.207 -77%

Maintainer

Maintainer

Francesco Favero

favero.francesco@gmail.com

Authors

Francesco Favero

aut / cre

Andrea Marion Marquard

rev

Tejal Joshi

rev

Aron Charles Eklund

aut / ths

Material

NEWS
Reference manual
Package source

Vignettes

Sequenza User Guide

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

sequenza archive

Depends

R ≥ 3.2.0

Imports

pbapply
squash
iotools
readr
seqminer
copynumber

Suggests

testthat
knitr
rmarkdown
rmdformats