CRAN/E | scfetch

scfetch

Access and Format Single-Cell RNA-Seq Datasets from Public Resources

Installation

About

The goal of 'scfetch' is to access and format single-cell RNA-seq datasets. It can be used to download single-cell RNA-seq datasets from widely used public resources, including GEO , Zenodo , CELLxGENE , Human Cell Atlas , PanglaoDB and UCSC Cell Browser . And, it can also be used to perform object conversion between SeuratObject , loom , h5ad , SingleCellExperiment , CellDataSet and cell_data_set .

github.com/showteeth/scfetch
Bug report File report

Key Metrics

Version 0.5.0
R ≥ 2.10
Published 2023-11-21 164 days ago
Needs compilation? no
License GPL (≥ 3)
CRAN checks scfetch results

Downloads

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Last 30 days 189 -13%
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Last 365 days 1.238

Maintainer

Maintainer

Yabing Song

songyb0519@gmail.com

Authors

Yabing Song

aut / cre

Material

README
NEWS
Reference manual
Package source

Additional repos

showteeth.github.io/drat/

Vignettes

scfetch

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-develnot available

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Depends

R ≥ 2.10

Imports

Biobase
curl
data.table
dplyr
GEOquery
jsonlite
magrittr
Matrix
openxlsx
parallel
pbapply
purrr
rPanglaoDB
reticulate
Seurat
tibble
tools
utils
SingleCellExperiment
SummarizedExperiment
scater
LoomExperiment
httr
rlang
tidyr
methods

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