CRAN/E | scDHA

scDHA

Single-Cell Decomposition using Hierarchical Autoencoder

Installation

About

Provides a fast and accurate pipeline for single-cell analyses. The 'scDHA' software package can perform clustering, dimension reduction and visualization, classification, and time-trajectory inference on single-cell data (Tran et.al. (2021) doi:10.1038/s41467-021-21312-2).

Citation scDHA citation info
github.com/duct317/scDHA
Copyright see file COPYRIGHTS
Bug report File report

Key Metrics

Version 1.2.2
R ≥ 3.4
Published 2024-04-02 32 days ago
Needs compilation? yes
License GPL-3
CRAN checks scDHA results

Downloads

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Maintainer

Maintainer

Ha Nguyen

hvn0006@auburn.edu

Authors

Ha Nguyen

cre

Duc Tran

aut

Tin Nguyen

fnd

Material

README
NEWS
Reference manual
Package source

Vignettes

scDHA package manual

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

scDHA archive

Depends

R ≥ 3.4

Imports

matrixStats
foreach
doParallel
igraph
Matrix
uwot
cluster
Rcpp
RcppParallel
RcppAnnoy
methods
torch ≥0.3.0
RhpcBLASctl
coro

Suggests

testthat
knitr
mclust

LinkingTo

Rcpp
RcppArmadillo
RcppParallel
RcppAnnoy

Reverse Imports

ScRNAIMM