rbiom
Read/Write, Analyze, and Visualize 'BIOM' Data
A toolkit for working with Biological Observation Matrix ('BIOM') files. Read/write all 'BIOM' formats. Compute rarefaction, alpha diversity, and beta diversity (including 'UniFrac'). Summarize counts by taxonomic level. Subset based on metadata. Generate visualizations and statistical analyses. CPU intensive operations are coded in C for speed.
- Version2.0.13
- R versionR (≥ 4.2.0)
- LicenseMIT
- LicenseLICENSE
- Needs compilation?Yes
- Last release01/24/2025
Documentation
Team
Daniel P. Smith
MaintainerShow author detailsAlkek Center for Metagenomics and Microbiome Research
Show author detailsRolesCopyright holder, fnd
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Dependencies
- Imports20 packages
- Suggests17 packages