CRAN/E | psborrow2

psborrow2

Bayesian Dynamic Borrowing Analysis and Simulation

Installation

About

Bayesian dynamic borrowing is an approach to incorporating external data to supplement a randomized, controlled trial analysis in which external data are incorporated in a dynamic way (e.g., based on similarity of outcomes); see Viele 2013 doi:10.1002/pst.1589 for an overview. This package implements the hierarchical commensurate prior approach to dynamic borrowing as described in Hobbes 2011 doi:10.1111/j.1541-0420.2011.01564.x. There are three main functionalities. First, 'psborrow2' provides a user-friendly interface for applying dynamic borrowing on the study results handles the Markov Chain Monte Carlo sampling on behalf of the user. Second, 'psborrow2' provides a simulation framework to compare different borrowing parameters (e.g. full borrowing, no borrowing, dynamic borrowing) and other trial and borrowing characteristics (e.g. sample size, covariates) in a unified way. Third, 'psborrow2' provides a set of functions to generate data for simulation studies, and also allows the user to specify their own data generation process. This package is designed to use the sampling functions from 'cmdstanr' which can be installed from .

github.com/Genentech/psborrow2
genentech.github.io/psborrow2/index.html
System requirements cmdstan
Bug report File report

Key Metrics

Version 0.0.3.4
R ≥ 4.1.0
Published 2024-04-30 3 days ago
Needs compilation? no
License Apache License 2.0
CRAN checks psborrow2 results
Language en-US

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Maintainer

Maintainer

Matt Secrest

secrestm@gene.com

Authors

Matt Secrest

aut / cre

Isaac Gravestock

aut

Craig Gower-Page

ctb

Manoj Khanal

ctb

Mingyang Shan

ctb

Kexin Jin

ctb

Zhi Yang

ctb

Genentech
Inc.

cph / fnd

Material

NEWS
Reference manual
Package source

Additional repos

mc-stan.org/r-packages/

Vignettes

7. Data Simulation
2. Conduct a hybrid control analysis on a dataset using BDB
3. Specifying prior distributions
5. Incorporating propensity scores analysis in psborrow2
1. Getting started with psborrow2
4. Conduct a simulation study
6. Comparison of Fixed Weights

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

psborrow2 archive

Depends

R ≥ 4.1.0

Imports

checkmate
glue
methods
graphics
posterior
generics
Matrix
mvtnorm
future
simsurv

Suggests

cmdstanr
survival
flexsurv
testthat ≥ 3.0
usethis ≥2.1.5
vdiffr
tibble
xml2
knitr
rmarkdown
bayesplot
matrixcalc
WeightIt
MatchIt
BayesPPD
ggsurvfit
gbm
ggplot2
cobalt
table1
gt
gtsummary