CRAN/E | promor

promor

Proteomics Data Analysis and Modeling Tools

Installation

About

A comprehensive, user-friendly package for label-free proteomics data analysis and machine learning-based modeling. Data generated from 'MaxQuant' can be easily used to conduct differential expression analysis, build predictive models with top protein candidates, and assess model performance. promor includes a suite of tools for quality control, visualization, missing data imputation (Lazar et. al. (2016) doi:10.1021/acs.jproteome.5b00981), differential expression analysis (Ritchie et. al. (2015) doi:10.1093/nar/gkv007), and machine learning-based modeling (Kuhn (2008) doi:10.18637/jss.v028.i05).

Citation promor citation info
github.com/caranathunge/promor
caranathunge.github.io/promor/
Bug report File report

Key Metrics

Version 0.2.1
R ≥ 3.5.0
Published 2023-07-17 288 days ago
Needs compilation? no
License LGPL-2.1
License LGPL-3
CRAN checks promor results
Language en-US

Downloads

Yesterday 4 0%
Last 7 days 74 -4%
Last 30 days 244 +4%
Last 90 days 687 -21%
Last 365 days 3.110 +59%

Maintainer

Maintainer

Chathurani Ranathunge

caranathunge86@gmail.com

Authors

Chathurani Ranathunge

aut / cre / cph

Material

README
NEWS
Reference manual
Package source

Vignettes

Introduction to promor

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

promor archive

Depends

R ≥ 3.5.0

Imports

reshape2
ggplot2
ggrepel
gridExtra
limma
statmod
pcaMethods
VIM
missForest
caret
kernlab
xgboost
naivebayes
viridis
pROC

Suggests

covr
knitr
rmarkdown
testthat ≥ 3.0.0