CRAN/E | preseqR

preseqR

Predicting Species Accumulation Curves

Installation

About

Originally as an R version of Preseq doi:10.1038/nmeth.2375, the package has extended its functionality to predict the r-species accumulation curve (r-SAC), which is the number of species represented at least r times as a function of the sampling effort. When r = 1, the curve is known as the species accumulation curve, or the library complexity curve in high-throughput genomic sequencing. The package includes both parametric and nonparametric methods, as described by Deng C, et al. (2018) .

Citation preseqR citation info

Key Metrics

Version 4.0.0
Published 2018-06-27 2138 days ago
Needs compilation? no
License GPL-3
CRAN checks preseqR results

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Maintainer

Maintainer

Chao Deng

chaodeng@usc.edu

Authors

Chao Deng
Timothy Daley
Andrew D. Smith

Material

README
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

preseqR archive

Imports

polynom
graphics
stats

Reverse Imports

ATACseqQC
scRecover