CRAN/E | poolABC

poolABC

Approximate Bayesian Computation with Pooled Sequencing Data

Installation

About

Provides functions to simulate Pool-seq data under models of demographic formation and to import Pool-seq data from real populations. Implements two ABC algorithms for performing parameter estimation and model selection using Pool-seq data. Cross-validation can also be performed to assess the accuracy of ABC estimates and model choice. Carvalho et al., (2022) doi:10.1111/1755-0998.13834.

github.com/joao-mcarvalho/poolABC
Bug report File report

Key Metrics

Version 1.0.0
R ≥ 2.10
Published 2023-08-08 268 days ago
Needs compilation? no
License GPL (≥ 3)
CRAN checks poolABC results

Downloads

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Maintainer

Maintainer

João Carvalho

jgcarvalho@fc.ul.pt

Authors

João Carvalho

aut / cre / cph

Vítor Sousa

aut

Material

README
NEWS
Reference manual
Package source

Vignettes

poolABC

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-develnot available

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Depends

R ≥ 2.10

Imports

doParallel
foreach
ggplot2
graphics
locfit
MetricsWeighted
nnet
poolHelper ≥ 1.1.0
RColorBrewer
rlang
scrm
stats
utils

Suggests

knitr
rmarkdown