CRAN/E | phyr

phyr

Model Based Phylogenetic Analysis

Installation

About

A collection of functions to do model-based phylogenetic analysis. It includes functions to calculate community phylogenetic diversity, to estimate correlations among functional traits while accounting for phylogenetic relationships, and to fit phylogenetic generalized linear mixed models. The Bayesian phylogenetic generalized linear mixed models are fitted with the 'INLA' package ().

daijiang.github.io/phyr/
github.com/daijiang/phyr/
Bug report File report

Key Metrics

Version 1.1.0
R ≥ 3.1
Published 2020-12-18 1225 days ago
Needs compilation? yes
License GPL-3
CRAN checks phyr results

Downloads

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Maintainer

Maintainer

Daijiang Li

daijianglee@gmail.com

Authors

Anthony Ives

aut

Russell Dinnage

aut

Lucas A. Nell

aut

Matthew Helmus

aut

Daijiang Li

aut / cre

Material

README
NEWS
Reference manual
Package source

Additional repos

inla.r-inla-download.org/R/stable/

Vignettes

Performance benchmark
Usage of pglmm()
Plot random terms of communityPGLMM

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

phyr archive

Depends

R ≥ 3.1

Imports

stats
ape
Rcpp
Matrix
methods
graphics
dplyr
lme4
nloptr
gridExtra
mvtnorm
latticeExtra
tidyr

Suggests

testthat
pez
knitr
rmarkdown
covr
picante
rbenchmark
INLA
MCMCglmm
logistf
phylolm
ggplot2
ggridges
DHARMa
rr2

LinkingTo

Rcpp
RcppArmadillo

Reverse Enhances

DHARMa