CRAN/E | osmose

osmose

Object Oriented Simulator of Marine Ecosystems

Installation

About

The multispecies and individual-based model (IBM) 'OSMOSE' (Shin and Curry (2001) doi:10.1016/S0990-7440(01)01106-8 and Shin and Curry (2004) doi:10.1139/f03-154) focuses on fish species. This model assumes opportunistic predation based on spatial co-occurrence and size adequacy between a predator and its prey (size-based opportunistic predation). It represents fish individuals grouped into schools, which are characterized by their size, weight, age, taxonomy and geographical location (2D model), and which undergo major processes of fish life cycle (growth, explicit predation, natural and starvation mortalities, reproduction and migration) and fishing exploitation. The model needs basic biological parameters that are often available for a wide range of species, and which can be found in 'FishBase' for instance (see ), and fish spatial distribution data. This package provides tools to build and run simulations using the 'OSMOSE' model.

www.osmose-model.org/
System requirements Java (>= 8)
Bug report File report

Key Metrics

Version 3.3.4
R ≥ 3.5.0
Published 2020-04-28 1467 days ago
Needs compilation? no
License CeCILL
CRAN checks osmose results

Downloads

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Maintainer

Maintainer

Nicolas Barrier

nicolas.barrier@ird.fr

Authors

Yunne-Jai Shin

aut

Travers Morgane

aut

Verley Philippe

aut

Ricardo Oliveros-Ramos

aut

Laure Velez

aut

Nicolas Barrier

cre

Criscely Lujan

ctb

Michael Hurtado

ctb

Wencheng Lau-Medrano

ctb

Material

README
NEWS
Reference manual
Package source

Vignettes

Creates a folder with basic files for a running. Then, run the model and read the outputs.
Plot method demonstration

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

osmose archive

Depends

R ≥ 3.5.0

Imports

graphics
grDevices
rlist
stats
knitr
rmarkdown
stringr
utils
ncdf4
mgcv
fields