CRAN/E | mixsqp

mixsqp

Sequential Quadratic Programming for Fast Maximum-Likelihood Estimation of Mixture Proportions

Installation

About

Provides an optimization method based on sequential quadratic programming (SQP) for maximum likelihood estimation of the mixture proportions in a finite mixture model where the component densities are known. The algorithm is expected to obtain solutions that are at least as accurate as the state-of-the-art MOSEK interior-point solver (called by function "KWDual" in the 'REBayes' package), and they are expected to arrive at solutions more quickly when the number of samples is large and the number of mixture components is not too large. This implements the "mix-SQP" algorithm, with some improvements, described in Y. Kim, P. Carbonetto, M. Stephens & M. Anitescu (2020) doi:10.1080/10618600.2019.1689985.

Citation mixsqp citation info
github.com/stephenslab/mixsqp
Bug report File report

Key Metrics

Version 0.3-54
R ≥ 3.3.0
Published 2023-12-20 136 days ago
Needs compilation? yes
License MIT
License File
CRAN checks mixsqp results

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Maintainer

Maintainer

Peter Carbonetto

peter.carbonetto@gmail.com

Authors

Youngseok Kim

aut

Peter Carbonetto

aut / cre

Mihai Anitescu

aut

Matthew Stephens

aut

Jason Willwerscheid

ctb

Jean Morrison

ctb

Material

Reference manual
Package source

In Views

Optimization

Vignettes

mixsqp-intro

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

mixsqp archive

Depends

R ≥ 3.3.0

Imports

utils
stats
irlba
Rcpp ≥ 0.12.15

Suggests

testthat
knitr
rmarkdown

LinkingTo

Rcpp
RcppArmadillo

Reverse Imports

ashr
ebnm
susieR