CRAN/E | klic

klic

Kernel Learning Integrative Clustering

Installation

About

Kernel Learning Integrative Clustering (KLIC) is an algorithm that allows to combine multiple kernels, each representing a different measure of the similarity between a set of observations. The contribution of each kernel on the final clustering is weighted according to the amount of information carried by it. As well as providing the functions required to perform the kernel-based clustering, this package also allows the user to simply give the data as input: the kernels are then built using consensus clustering. Different strategies to choose the best number of clusters are also available. For further details please see Cabassi and Kirk (2020) doi:10.1093/bioinformatics/btaa593.

Citation klic citation info
github.com/acabassi/klic
System requirements MOSEK (http://www.mosek.com) and MOSEK license.
Bug report File report

Key Metrics

Version 1.0.4
R ≥ 3.5.0
Published 2020-07-06 1393 days ago
Needs compilation? no
License MIT
License File
CRAN checks klic results

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Maintainer

Maintainer

Alessandra Cabassi

alessandra.cabassi@mrc-bsu.cam.ac.uk

Authors

Alessandra Cabassi

aut / cre

Paul DW Kirk

ths

Mehmet Gonen

ctb

Material

README
Reference manual
Package source

Vignettes

R package klic

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

klic archive

Depends

R ≥ 3.5.0

Imports

Matrix
cluster
coca
RColorBrewer
pheatmap
utils

Suggests

Rmosek
tikzDevice
mclust
grDevices
graphics
knitr
markdown