CRAN/E | imcExperiment

imcExperiment

Mass Cytometry S4 Class Structure Pipeline for Images

Installation

About

Containerizes cytometry data and allows for S4 class structure to extend slots related to cell morphology, spatial coordinates, phenotype network information, and unique cellular labeling.

Key Metrics

Version 0.99.0
R ≥ 4.0
Published 2021-08-19 991 days ago
Needs compilation? no
License MIT
License File
CRAN checks imcExperiment results

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Maintainer

Maintainer

Anthony Colombo

anthonycolombo60@gmail.com

Authors

Anthony Colombo

aut / cre

Material

README
Reference manual
Package source

Vignettes

imcExperiment: containerization of IMC data

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Depends

R ≥ 4.0
SingleCellExperiment
methods

Imports

SummarizedExperiment
S4Vectors
spatstat.geom
stats

Suggests

knitr
rmarkdown