CRAN/E | hlaR

hlaR

Tools for HLA Data

Installation

About

A streamlined tool for eplet analysis of donor and recipient HLA (human leukocyte antigen) mismatch. Messy, low-resolution HLA typing data is cleaned, and imputed to high-resolution using the NMDP (National Marrow Donor Program) haplotype reference database . High resolution data is analyzed for overall or single antigen eplet mismatch using a reference table (currently supporting 'HLAMatchMaker' versions 2 and 3). Data can enter or exit the workflow at different points depending on the user's aims and initial data quality.

pubmed.ncbi.nlm.nih.gov/35101308/
emory-larsenlab.shinyapps.io/hlar_shiny/
Bug report File report

Key Metrics

Version 1.0.0
R ≥ 4.1.0
Published 2023-01-31 455 days ago
Needs compilation? no
License MIT
License File
CRAN checks hlaR results

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Maintainer

Maintainer

Joan Zhang

joan.zhang@emory.edu

Authors

Joan Zhang

aut / cre

Aileen Johnson

aut

Christian P Larsen

cph / aut

Material

Reference manual
Package source

Vignettes

Imputation
Eplet Mismatch

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

hlaR archive

Depends

R ≥ 4.1.0

Imports

devtools
tidyverse
dplyr
reshape2
schoolmath
tibble
tidyselect
stringr
purrr
tidyr
utils
readr
janitor

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