CRAN/E | eCV

eCV

Enhanced Coefficient of Variation and IDR Extensions for Reproducibility Assessment

Installation

About

Reproducibility assessment is essential in extracting reliable scientific insights from high-throughput experiments. While the Irreproducibility Discovery Rate (IDR) method has been instrumental in assessing reproducibility, its standard implementation is constrained to handling only two replicates. Package 'eCV' introduces an enhanced Coefficient of Variation (eCV) metric to assess the likelihood of omic features being reproducible. Additionally, it offers alternatives to the Irreproducible Discovery Rate (IDR) calculations for multi-replicate experiments. These tools are valuable for analyzing high-throughput data in genomics and other omics fields. The methods implemented in 'eCV' are described in Gonzalez-Reymundez et al., (2023) doi:10.1101/2023.12.18.572208.

github.com/eclipsebio/eCV
Bug report File report

Key Metrics

Version 0.0.2
R ≥ 3.5.0
Published 2024-01-19 105 days ago
Needs compilation? no
License GPL (≥ 3)
CRAN checks eCV results
Language en-US

Downloads

Yesterday 10 0%
Last 7 days 38 -27%
Last 30 days 164 -11%
Last 90 days 479 +18%
Last 365 days 881

Maintainer

Maintainer

Agustin Gonzalez-Reymundez

agustin.gonrey@eclipsebio.com

Authors

Agustin Gonzalez-Reymundez

aut / cre

Material

README
NEWS
Reference manual
Package source

Vignettes

Introduction to the eCV package

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrelnot available

x86_64

Old Sources

eCV archive

Depends

R ≥ 3.5.0
idr ≥ 1.3
mvtnorm ≥ 1.1.3
future ≥1.4.0
future.apply ≥ 1.9.0

Imports

stats
utils

Suggests

knitr
rmarkdown
testthat ≥ 3.0.0
tidyverse