CRAN/E | demic

demic

Dynamic Estimator of Microbial Communities

Installation

About

Multi-sample algorithm based on contigs and coverage values, to infer the relative distances of contigs from the replication origin and to accurately compare bacterial growth rates between samples. Yuan Gao and Hongzhe Li (2018) doi:10.1038/s41592-018-0182-0.

github.com/Ulthran/DEMIC
Bug report File report

Key Metrics

Version 2.0.0
R ≥ 2.10
Published 2024-01-22 100 days ago
Needs compilation? no
License GPL (≥ 3)
CRAN checks demic results

Downloads

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Maintainer

Maintainer

Charlie Bushman

ctbushman@gmail.com

Authors

Yuan Gao

aut / cph

Charlie Bushman

cre

Material

README
NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

demic archive

Depends

R ≥ 2.10

Imports

lme4
Matrix ≥ 1.6-2
reshape2

Suggests

covr
lintr
testthat ≥ 3.0.0