CRAN/E | cytometree

cytometree

Automated Cytometry Gating and Annotation

Installation

About

Given the hypothesis of a bi-modal distribution of cells for each marker, the algorithm constructs a binary tree, the nodes of which are subpopulations of cells. At each node, observed cells and markers are modeled by both a family of normal distributions and a family of bi-modal normal mixture distributions. Splitting is done according to a normalized difference of AIC between the two families. Method is detailed in: Commenges, Alkhassim, Gottardo, Hejblum & Thiebaut (2018) doi:10.1002/cyto.a.23601.

Citation cytometree citation info
Bug report File report

Key Metrics

Version 2.0.2
R ≥ 3.1.0
Published 2019-12-04 1605 days ago
Needs compilation? yes
License LGPL-3
License File
CRAN checks cytometree results

Downloads

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Maintainer

Maintainer

Boris P Hejblum

boris.hejblum@u-bordeaux.fr

Authors

Chariff Alkhassim
Boris P Hejblum
Anthony Devaux
Van Hung Huynh Tran

Material

README
NEWS
Reference manual
Package source

Vignettes

User guide for performing automatic gating with 'cytometree'
'cytoftree': extension of 'cytometree' to analyze mass cytometry data

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

cytometree archive

Depends

R ≥ 3.1.0
Rcpp ≥ 0.12.11

Imports

ggplot2
graphics
igraph
mclust
methods
stats
cowplot
GoFKernel

Suggests

knitr
formatR
rmarkdown
viridis

LinkingTo

Rcpp
RcppArmadillo

Reverse Imports

cyanoFilter