CRAN/E | causalBatch

causalBatch

Causal Batch Effects

Installation

About

Software which provides numerous functionalities for detecting and removing group-level effects from high-dimensional scientific data which, when combined with additional assumptions, allow for causal conclusions, as-described in our manuscripts Bridgeford et al. (2024) doi:10.1101/2021.09.03.458920 and Bridgeford et al. (2023) . Also provides a number of useful utilities for generating simulations and balancing covariates across multiple groups/batches of data via matching and propensity trimming for more than two groups.

Citation causalBatch citation info
github.com/neurodata/causal_batch

Key Metrics

Version 1.2.0
R ≥ 4.2.0
Published 2024-03-01 62 days ago
Needs compilation? no
License MIT
License File
CRAN checks causalBatch results

Downloads

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Maintainer

Maintainer

Eric W. Bridgeford

ericwb95@gmail.com

Authors

Eric W. Bridgeford

aut / cre

Michael Powell

ctb

Brian Caffo

ctb

Joshua T. Vogelstein

ctb

Material

Reference manual
Package source

Vignettes

cb.balancing
cb.correct.causal_ccombat
cb.detect.caus_cdcorr
cb.simulations

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

causalBatch archive

Depends

R ≥ 4.2.0

Imports

cdcsis
sva
MatchIt
nnet
dplyr
magrittr

Suggests

tidyr
knitr
rmarkdown
parallel
testthat ≥ 3.0.0
covr
roxygen2
ks
ggplot2