CRAN/E | cRegulome

cRegulome

Obtain and Visualize Regulome-Gene Expression Correlations in Cancer

Installation

About

Builds a 'SQLite' database file of pre-calculated transcription factor/microRNA-gene correlations (co-expression) in cancer from the Cistrome Cancer Liu et al. (2011) doi:10.1186/gb-2011-12-8-r83 and 'miRCancerdb' databases (in press). Provides custom classes and functions to query, tidy and plot the correlation data.

Citation cRegulome citation info
docs.ropensci.org/cRegulome
github.com/ropensci/cRegulome
Bug report File report

Key Metrics

Version 0.3.2
R ≥ 2.10.0
Published 2020-05-08 1449 days ago
Needs compilation? no
License GPL-3
CRAN checks cRegulome results

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Maintainer

Maintainer

Mahmoud Ahmed

mahmoud.s.fahmy@students.kasralainy.edu.eg

Authors

Mahmoud Ahmed

aut / cre

Material

README
NEWS
Reference manual
Package source

Vignettes

Case Study
Using cRegulome

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

cRegulome archive

Depends

R ≥ 2.10.0

Imports

DBI
graphics
httr
RSQLite
UpSetR
VennDiagram
ggplot2
ggridges
grid
R.utils
igraph

Suggests

knitr
rmarkdown
testthat
covr
readxl
AnnotationDbi
org.Hs.eg.db
clusterProfiler