CRAN/E | amanida

amanida

Meta-Analysis for Non-Integral Data

Installation

About

Combination of results for meta-analysis using significance and effect size only. P-values and fold-change are combined to obtain a global significance on each metabolite. Produces a volcano plot summarising the relevant results from meta-analysis. Vote-counting reports for metabolites. And explore plot to detect discrepancies between studies at a first glance. Methodology is described in the Llambrich et al. (2021) doi:10.1093/bioinformatics/btab591.

github.com/mariallr/amanida

Key Metrics

Version 0.3.0
R ≥ 4.1
Published 2024-01-26 91 days ago
Needs compilation? no
License GPL-3
CRAN checks amanida results

Downloads

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Maintainer

Maintainer

Maria Llambrich

maria.llambrich@urv.cat

Authors

Maria Llambrich

aut / cre

Eudald Correig

aut

Raquel Cumeras

aut

Material

README
Reference manual
Package source

In Views

MetaAnalysis

Vignettes

amanida_UserGuide

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

amanida archive

Depends

R ≥ 4.1

Imports

dplyr ≥ 1.0.0
ggplot2 ≥ 3.3.0
ggrepel ≥ 0.9.0
kableExtra ≥ 1.3.0
knitr ≥ 1.45
magrittr ≥ 1.5
methods ≥ 3.6.0
readr ≥ 1.0.0
readxl ≥ 1.0.0
rmarkdown ≥ 2.25
stats ≥ 3.6.0
tibble ≥ 3.0.0
tidyr ≥ 1.1.0
tidyverse ≥ 1.3.0
webchem ≥ 1.1.0

Suggests

markdown
metaboliteIDmapping
testthat
vdiffr