CRAN/E | WormTensor

WormTensor

A Clustering Method for Time-Series Whole-Brain Activity Data of 'C. elegans'

Installation

About

A toolkit to detect clusters from distance matrices. The distance matrices are assumed to be calculated between the cells of multiple animals ('Caenorhabditis elegans') from input time-series matrices. Some functions for generating distance matrices, performing clustering, evaluating the clustering, and visualizing the results of clustering and evaluation are available. We're also providing the download function to retrieve the calculated distance matrices from 'figshare' .

github.com/rikenbit/WormTensor
Bug report File report

Key Metrics

Version 0.1.0
R ≥ 4.1.0
Published 2022-09-08 604 days ago
Needs compilation? no
License MIT
License File
CRAN checks WormTensor results

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Maintainer

Maintainer

Kentaro Yamamoto

yamaken37.the.answer@gmail.com

Authors

Kentaro Yamamoto

aut / cre

Koki Tsuyuzaki

aut

Itoshi Nikaido

aut

Material

NEWS
Reference manual
Package source

Vignettes

WormTensor

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-develnot available

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Depends

R ≥ 4.1.0

Imports

rTensor
usedist
dtwclust
clusterSim
clValid
aricode
cluster
ggplot2
Rtsne
uwot
factoextra
ggrepel
cowplot
methods

Suggests

knitr
rmarkdown
testthat ≥ 3.0.0