CRAN/E | Sysrecon

Sysrecon

Systematical Metabolic Reconstruction

Installation

About

In the past decade, genome-scale metabolic reconstructions have widely been used to comprehend the systems biology of metabolic pathways within an organism. Different GSMs are constructed using various techniques that require distinct steps, but the input data, information conversion and software tools are neither concisely defined nor mathematically or programmatically formulated in a context-specific manner.The tool that quantitatively and qualitatively specifies each reconstruction steps and can generate a template list of reconstruction steps dynamically selected from a reconstruction step reservoir, constructed based on all available published papers.

oyshilin.github.io/sysrecon/

Key Metrics

Version 0.1.3
R ≥ 3.5.0
Published 2023-02-20 439 days ago
Needs compilation? no
License GPL-3
CRAN checks Sysrecon results

Downloads

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Maintainer

Maintainer

Shilin Ouyang

ouyangshilin@hnu.edu.cn

Authors

Shilin Ouyang

aut / cre

Zihao Li

aut

Jiamin Hu

aut

Miyuan Cao

aut

Feng Yu

aut

Longfei Mao

aut

RStudio

cph / fnd

Material

README
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

Sysrecon archive

Depends

R ≥ 3.5.0

Imports

ape
dplyr
ggplot2
ggtree
magrittr
methods
patchwork
plyr
RColorBrewer
rlang
SnowballC
stats
stringr
tm
utils