CRAN/E | SmCCNet

SmCCNet

Sparse Multiple Canonical Correlation Network Analysis Tool

Installation

About

A canonical correlation based framework (SmCCNet) designed for the construction of phenotype-specific multi-omics networks. This framework adeptly integrates single or multiple omics data types along with a quantitative or binary phenotype of interest. It offers a streamlined setup process that can be tailored manually or configured automatically, ensuring a flexible and user-friendly experience.

github.com/KechrisLab/SmCCNet
kechrislab.github.io/SmCCNet/
liux4283.github.io/SmCCNet/

Key Metrics

Version 2.0.3
R ≥ 3.5
Published 2024-04-16 21 days ago
Needs compilation? no
License GPL-3
CRAN checks SmCCNet results

Downloads

Yesterday 16 0%
Last 7 days 52 -54%
Last 30 days 346 +77%
Last 90 days 708 -26%
Last 365 days 2.651 +27%

Maintainer

Maintainer

Weixuan Liu

weixuan.liu@cuanschutz.edu

Authors

Weixuan Liu

aut / cre

Yonghua Zhuang

aut / cre

W. Jenny Shi

aut / cre

Thao Vu

aut

Iain Konigsberg

aut

Katherine Pratte

aut

Laura Saba

aut

Katerina Kechris

aut

Material

NEWS
Reference manual
Package source

Vignettes

Automated SmCCNet
Reconstructing phenotype-specific multi-omics networks with SmCCNet
Reconstructing Phenotype-Specific Single-Omics Networks with SmCCNet

macOS

r-prerel

arm64

r-release

arm64

r-oldrel

arm64

r-prerel

x86_64

r-release

x86_64

Windows

r-prerel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

SmCCNet archive

Depends

R ≥ 3.5

Imports

EnvStats
future
pROC
spls
Matrix
pbapply
igraph
magrittr
rlist
furrr
purrr
pracma

Suggests

knitr
rmarkdown
testthat ≥ 3.0.0
dplyr
reshape2
shadowtext
tidyverse
parallel
mltools
caret